Basic Information
Locus ID:
Ftri4G15456
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 85536138 | 85543840 | - | Ftri4G15456 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.38 | 89,626.69 Da | 38.40 | 87.56 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17939 | DEADc_EIF4A | 438 | 636 | 1.91826E-133 | - |
| CDD | cd18787 | SF2_C_DEAD | 647 | 777 | 2.29567E-59 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 459 | 620 | 1.4E-39 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 660 | 768 | 2.0E-28 | IPR001650 |
| Pfam | PF00400 | WD domain, G-beta repeat | 198 | 232 | 0.0044 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 256 | 281 | 0.016 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 32 | 332 | 5.5E-33 | IPR036322 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 503 | 788 | 2.46E-73 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 424 | 642 | 1.4E-66 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 643 | 807 | 2.1E-57 | IPR027417 |
| Gene3D | G3DSA:2.130.10.10 | - | 8 | 137 | 7.1E-10 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 146 | 368 | 1.3E-22 | IPR015943 |
| SMART | SM00320 | WD40_4 | 82 | 123 | 0.0055 | IPR001680 |
| SMART | SM00320 | WD40_4 | 19 | 60 | 5.4 | IPR001680 |
| SMART | SM00487 | ultradead3 | 453 | 650 | 8.6E-56 | IPR014001 |
| SMART | SM00320 | WD40_4 | 235 | 281 | 0.59 | IPR001680 |
| SMART | SM00320 | WD40_4 | 155 | 190 | 96.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 193 | 232 | 3.2E-5 | IPR001680 |
| SMART | SM00490 | helicmild6 | 687 | 768 | 1.5E-31 | IPR001650 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 200 | 237 | 9.441055 | - |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 465 | 635 | 28.572783 | IPR014001 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 200 | 241 | 12.246197 | IPR001680 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 434 | 462 | 10.40907 | IPR014014 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 646 | 807 | 25.880337 | IPR001650 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 219 | 233 | - | IPR019775 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 581 | 589 | - | IPR000629 |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G54270.1 | eif4a-2. member of eIF4A - eukaryotic initiation factor 4A | 0 |
| RefSeq | XP_035834336.1 | eukaryotic initiation factor 4A-15 [Helianthus annuus] | 0 |
| Q40468 | Eukaryotic initiation factor 4A-15 OS=Nicotiana tabacum OX=4097 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6P9ESY1 | eukaryotic initiation factor 4A-15-like OS=Juglans regia OX=51240 GN=LOC109009115 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology