Basic Information
Locus ID:
Ftri4G14350
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
Belongs to the NPH3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 74130994 | 74133563 | + | Ftri4G14350 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.70 | 67,397.28 Da | 36.70 | 92.54 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18312 | BTB_POZ_NPY3-like | 20 | 124 | 2.64733E-45 | - |
| Pfam | PF00651 | BTB/POZ domain | 26 | 117 | 4.8E-7 | IPR000210 |
| Pfam | PF03000 | NPH3 family | 200 | 397 | 1.0E-51 | IPR027356 |
| Pfam | PF03000 | NPH3 family | 428 | 452 | 4.0E-7 | IPR027356 |
| SUPERFAMILY | SSF54695 | POZ domain | 7 | 117 | 3.14E-17 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 3 | 121 | 1.1E-11 | IPR011333 |
| ProSiteProfiles | PS51649 | NPH3 domain profile. | 200 | 476 | 65.546059 | IPR027356 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 27 | 97 | 9.744267 | IPR000210 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 495 | 514 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 567 | 610 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 571 | 596 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 496 | 514 | - | - |
| Coils | Coil | Coil | 516 | 536 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G14820.1 | Phototropic-responsive NPH3 family protein. A member of the NPY gene family (NPY1/AT4G31820, NPY2/AT2G14820, NPY3/AT5G67440, NPY4/AT2G23050, NPY5/AT4G37590). Involved in auxin-mediated organogenesis. | 0 |
| RefSeq | XP_021989191.1 | BTB/POZ domain-containing protein NPY2 [Helianthus annuus] | 0 |
| O80970 | Phototropic-responsive NPH3 family protein NPY2 OS=Arabidopsis thaliana OX=3702 GN=NPY2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5N6PP20 | Phototropic-responsive NPH3 family protein OS=Mikania micrantha OX=192012 GN=E3N88_06228 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology