Basic Information
Locus ID:
Ftri4G13641
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 84940220 | 84941744 | - | Ftri4G13641 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.05 | 50,434.82 Da | 55.55 | 89.05 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 139 | 182 | 6.31771E-18 | - |
| Pfam | PF13639 | Ring finger domain | 139 | 182 | 8.8E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 119 | 188 | 3.76E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 114 | 191 | 8.5E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 140 | 181 | 4.7E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 140 | 182 | 12.533537 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 353 | 374 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G28890.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021990468.1 | E3 ubiquitin-protein ligase ATL42 [Helianthus annuus] | 0 |
| Q5XF85 | E3 ubiquitin-protein ligase ATL42 OS=Arabidopsis thaliana OX=3702 GN=ATL42 PE=1 SV=2 | 0 | |
| TrEMBL | A0A251TRP2 | Putative RING/U-box superfamily protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr10g0318461 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology