Basic Information
Locus ID:
Ftri4G11980
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 84185143 | 84187931 | + | Ftri4G11980 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.54 | 29,308.23 Da | 39.44 | 100.90 | 0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 20 | 60 | 4.46796E-15 | - |
| Pfam | PF12906 | RING-variant domain | 20 | 59 | 6.6E-9 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 14 | 64 | 1.18E-11 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 13 | 71 | 1.4E-13 | IPR013083 |
| SMART | SM00744 | ringv_2 | 17 | 60 | 6.0E-10 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 1 | 66 | 15.65516 | IPR011016 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G11020.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_021990340.1 | uncharacterized protein LOC110886803 [Helianthus annuus] | 0 |
| TrEMBL | A0A251TR66 | Putative RING/FYVE/PHD zinc finger superfamily protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr10g0316721 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology