Basic Information
Locus ID:
Ftri4G09309
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
Transcriptional corepressor LEUNIG-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 84396460 | 84404436 | + | Ftri4G09309 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.93 | 67,680.79 Da | 42.07 | 78.35 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 335 | 611 | 3.10768E-42 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 494 | 526 | 0.013 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 410 | 445 | 0.03 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 369 | 403 | 5.6E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 334 | 360 | 0.0016 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 335 | 611 | 5.86E-46 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 470 | 611 | 9.0E-16 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 316 | 467 | 9.8E-33 | IPR015943 |
| SMART | SM00320 | WD40_4 | 533 | 572 | 14.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 489 | 527 | 1.6E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 364 | 403 | 3.5E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 328 | 361 | 0.0055 | IPR001680 |
| SMART | SM00320 | WD40_4 | 407 | 446 | 0.0017 | IPR001680 |
| SMART | SM00320 | WD40_4 | 575 | 611 | 3.4 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 13 | 45 | 8.040648 | IPR006594 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 371 | 406 | 12.683765 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 371 | 406 | 15.387508 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 414 | 449 | 8.755605 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 414 | 455 | 11.109979 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 390 | 404 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 84 | 112 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 216 | 247 | - | - |
| Coils | Coil | Coil | 219 | 239 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G32551.1 | LisH dimerisation motif;WD40/YVTN repeat-like-containing domain. LEUNIG regulates floral organ identity,gynoecium and ovule development. Negatively regulates AGAMOUS . Encodes a glutamine-rich protein with seven WD repeats similar to transcriptional corepressors. | 0 |
| RefSeq | XP_021990412.1 | transcriptional corepressor LEUNIG isoform X2 [Helianthus annuus] | 0 |
| Q9FUY2 | Transcriptional corepressor LEUNIG OS=Arabidopsis thaliana OX=3702 GN=LUG PE=1 SV=2 | 0 | |
| TrEMBL | A0A251TRH7 | Putative LIS1 homology motif, WD40/YVTN repeat-like-containing domain protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr10g0317591 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology