Basic Information
Locus ID:
Ftri4G04924
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
ATP-dependent DNA helicase Q-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 69841744 | 69850478 | + | Ftri4G04924 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.50 | 118,604.91 Da | 45.21 | 82.85 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17920 | DEXHc_RecQ | 405 | 592 | 1.26532E-94 | - |
| CDD | cd18794 | SF2_C_RecQ | 593 | 725 | 1.93685E-72 | - |
| Pfam | PF09382 | RQC domain | 808 | 911 | 3.4E-9 | IPR018982 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 609 | 715 | 5.6E-18 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 419 | 572 | 9.0E-15 | IPR011545 |
| Pfam | PF00570 | HRDC domain | 957 | 1024 | 1.0E-14 | IPR002121 |
| Pfam | PF16124 | RecQ zinc-binding | 727 | 799 | 1.3E-14 | IPR032284 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 591 | 844 | 2.38E-56 | IPR027417 |
| SUPERFAMILY | SSF47819 | HRDC-like | 957 | 1028 | 1.33E-13 | IPR010997 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 376 | 734 | 1.45E-39 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 593 | 802 | 1.4E-65 | IPR027417 |
| Gene3D | G3DSA:1.10.150.80 | HRDC domain | 953 | 1037 | 7.2E-23 | IPR044876 |
| Gene3D | G3DSA:1.10.10.10 | - | 807 | 907 | 4.1E-14 | IPR036388 |
| Gene3D | G3DSA:3.40.50.300 | - | 378 | 592 | 1.0E-82 | IPR027417 |
| SMART | SM00341 | hrdc7 | 952 | 1034 | 1.7E-5 | IPR002121 |
| SMART | SM00956 | RQC_2 | 809 | 910 | 5.4E-10 | IPR018982 |
| SMART | SM00490 | helicmild6 | 635 | 716 | 2.1E-27 | IPR001650 |
| SMART | SM00487 | ultradead3 | 413 | 601 | 6.7E-28 | IPR014001 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 409 | 843 | 5.4E-155 | IPR004589 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 610 | 762 | 20.542419 | IPR001650 |
| ProSiteProfiles | PS50967 | HRDC domain profile. | 952 | 1034 | 17.704781 | IPR002121 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 425 | 585 | 22.480293 | IPR014001 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G10930.1 | DNA helicase (RECQl4A). DNA helicase involved in the maintenance of genome stability by modulation of the DNA damage response and suppression of homologous recombination. | 0 |
| RefSeq | XP_021988742.1 | ATP-dependent DNA helicase Q-like 4A isoform X1 [Helianthus annuus] | 0 |
| Q8L840 | ATP-dependent DNA helicase Q-like 4A OS=Arabidopsis thaliana OX=3702 GN=RECQL4A PE=2 SV=1 | 0 | |
| TrEMBL | A0A251TLC3 | DNA helicase OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr10g0298131 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology