Basic Information
Locus ID:
Ftri4G01708
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
Ankyrin repeats (many copies)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 83054981 | 83057598 | + | Ftri4G01708 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.14 | 48,993.83 Da | 49.31 | 80.28 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13637 | Ankyrin repeats (many copies) | 147 | 208 | 2.3E-9 | - |
| Pfam | PF13637 | Ankyrin repeats (many copies) | 52 | 102 | 8.5E-12 | - |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 20 | 241 | 2.49E-39 | IPR036770 |
| SUPERFAMILY | SSF57850 | RING/U-box | 282 | 339 | 1.02E-7 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 275 | 349 | 3.0E-5 | IPR013083 |
| Gene3D | G3DSA:1.25.40.20 | - | 109 | 257 | 1.7E-25 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 14 | 108 | 1.8E-19 | IPR036770 |
| SMART | SM00248 | ANK_2a | 50 | 79 | 4.8E-5 | IPR002110 |
| SMART | SM00248 | ANK_2a | 144 | 173 | 3.4E-5 | IPR002110 |
| SMART | SM00248 | ANK_2a | 81 | 111 | 0.04 | IPR002110 |
| SMART | SM00184 | ring_2 | 283 | 332 | 0.003 | IPR001841 |
| SMART | SM00248 | ANK_2a | 187 | 216 | 6.3E-5 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 50 | 81 | 12.142647 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 187 | 219 | 11.91483 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 144 | 172 | 12.22224 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 144 | 176 | 12.74284 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 50 | 82 | 13.25033 | IPR002110 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 283 | 333 | 9.420654 | IPR001841 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 187 | 218 | 10.709951 | - |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 298 | 307 | - | IPR017907 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G57740.1 | XB3 ortholog 2 in Arabidopsis thaliana. ubiquitin ligase | 0 |
| RefSeq | XP_021989451.1 | E3 ubiquitin-protein ligase XBAT32 [Helianthus annuus] | 0 |
| Q6NLQ8 | E3 ubiquitin-protein ligase XBAT32 OS=Arabidopsis thaliana OX=3702 GN=XBAT32 PE=1 SV=1 | 0 | |
| TrEMBL | A0A251TQ55 | Putative XB3-like protein OS=Helianthus annuus OX=4232 GN=XBAT32 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology