Basic Information
Locus ID:
Ftri3G32363
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 67407249 | 67411702 | + | Ftri3G32363 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.91 | 32,511.00 Da | 48.12 | 97.46 | 0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 44 | 95 | 1.14429E-22 | - |
| Pfam | PF12906 | RING-variant domain | 44 | 94 | 4.7E-12 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 41 | 99 | 5.18E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 28 | 108 | 2.6E-19 | IPR013083 |
| SMART | SM00744 | ringv_2 | 43 | 95 | 1.2E-18 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 36 | 101 | 22.154799 | IPR011016 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G11020.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_021968877.1 | E3 ubiquitin-protein ligase MARCHF8 [Helianthus annuus] | 0 |
| TrEMBL | A0A5N6NSR3 | RING-CH-type domain-containing protein OS=Mikania micrantha OX=192012 GN=E3N88_17697 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology