Basic Information
Locus ID:
Ftri3G31722
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 87257865 | 87262691 | + | Ftri3G31722 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.66 | 107,901.68 Da | 47.54 | 73.50 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 824 | 859 | 7.7E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 749 | 775 | 0.058 | IPR001680 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 232 | 495 | 7.01E-12 | IPR011009 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 654 | 964 | 3.97E-48 | IPR036322 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 231 | 499 | 2.0E-15 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 626 | 967 | 5.2E-122 | IPR015943 |
| SMART | SM00320 | WD40_4 | 692 | 732 | 0.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 781 | 817 | 4.5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 638 | 682 | 1.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 735 | 775 | 3.6E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 821 | 859 | 8.9E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 926 | 965 | 57.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 870 | 909 | 22.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 699 | 741 | 10.040596 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 742 | 784 | 9.138305 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 828 | 861 | 12.413288 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 828 | 861 | 10.337415 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 846 | 860 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 846 | 860 | 1.1E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 719 | 733 | 1.1E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 762 | 776 | 1.1E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 307 | 334 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 136 | 158 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 319 | 334 | - | - |
| Coils | Coil | Coil | 524 | 544 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G11110.1 | SPA1-related 2. Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4). SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain. SPA proteins function redundantly in suppressing photomorphogenesis in dark- and light-grown seedlings. SPA2 primarily regulates seedling development in darkness and has little function in light-grown seedlings or adult plants. | 0 |
| RefSeq | XP_021988307.1 | protein SPA1-RELATED 2 [Helianthus annuus] | 0 |
| Q9T014 | Protein SPA1-RELATED 2 OS=Arabidopsis thaliana OX=3702 GN=SPA2 PE=1 SV=2 | 0 | |
| TrEMBL | A0A5N6PN70 | WD_REPEATS_REGION domain-containing protein OS=Mikania micrantha OX=192012 GN=E3N88_05977 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology