Basic Information
Locus ID:
Ftri3G28550
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
Belongs to the universal ribosomal protein uS3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 83319340 | 83322060 | + | Ftri3G28550 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.78 | 22,788.68 Da | 38.92 | 97.88 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02413 | 40S_S3_KH | 1 | 52 | 1.15852E-30 | - |
| Pfam | PF07650 | KH domain | 2 | 50 | 3.1E-7 | IPR004044 |
| Pfam | PF00189 | Ribosomal protein S3, C-terminal domain | 63 | 145 | 7.1E-25 | IPR001351 |
| SUPERFAMILY | SSF54821 | Ribosomal protein S3 C-terminal domain | 50 | 148 | 6.15E-28 | IPR036419 |
| SUPERFAMILY | SSF54814 | Prokaryotic type KH domain (KH-domain type II) | 1 | 56 | 3.31E-14 | IPR009019 |
| Gene3D | G3DSA:3.30.1140.32 | - | 50 | 176 | 2.1E-64 | IPR036419 |
| Gene3D | G3DSA:3.30.300.20 | - | 1 | 49 | 1.1E-22 | IPR015946 |
| TIGRFAM | TIGR01008 | uS3_euk_arch: ribosomal protein uS3 | 1 | 167 | 1.1E-55 | IPR005703 |
| ProSitePatterns | PS00548 | Ribosomal protein S3 signature. | 104 | 140 | - | IPR018280 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G31610.1 | Ribosomal protein S3 family protein. | 0 |
| RefSeq | XP_021969778.1 | 40S ribosomal protein S3-1 [Helianthus annuus] | 0 |
| Q9SIP7 | Small ribosomal subunit protein uS3z OS=Arabidopsis thaliana OX=3702 GN=RPS3A PE=1 SV=1 | 0 | |
| TrEMBL | A0A251UGJ4 | 30S ribosomal protein S3, chloroplastic OS=Helianthus annuus OX=4232 GN=RS31 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology