Basic Information
Locus ID:
Ftri3G27466
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
spa1-related
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 15116970 | 15121411 | - | Ftri3G27466 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.82 | 69,660.06 Da | 53.15 | 78.64 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 394 | 428 | 1.8E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 477 | 512 | 1.3E-4 | IPR001680 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 9 | 112 | 1.96E-11 | IPR011009 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 302 | 615 | 4.32E-51 | IPR036322 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 4 | 108 | 4.4E-16 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 277 | 617 | 3.8E-117 | IPR015943 |
| SMART | SM00320 | WD40_4 | 576 | 615 | 280.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 521 | 560 | 11.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 431 | 470 | 0.84 | IPR001680 |
| SMART | SM00320 | WD40_4 | 388 | 428 | 2.1E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 298 | 333 | 1.8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 344 | 383 | 160.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 474 | 512 | 1.3E-6 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 395 | 432 | 10.416506 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 395 | 437 | 13.649761 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 481 | 521 | 12.714052 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 481 | 514 | 10.284687 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 415 | 429 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 499 | 513 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 415 | 429 | 2.1E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 499 | 513 | 2.1E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 457 | 471 | 2.1E-5 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G53090.1 | SPA1-related 4. Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4). SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain. SPA proteins function redundantly in suppressing photomorphogenesis in dark- and light-grown seedlings. SPA4 (and SPA3) predominantly regulates elongation growth in adult plants. | 0 |
| RefSeq | XP_022013365.1 | protein SPA1-RELATED 4 isoform X1 [Helianthus annuus] | 0 |
| Q94BM7 | Protein SPA1-RELATED 4 OS=Arabidopsis thaliana OX=3702 GN=SPA4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A251SC97 | Protein kinase domain-containing protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr15g0494631 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology