Basic Information
Locus ID:
Ftri3G25194
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
Mitogen-activated protein kinase-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 61247808 | 61255900 | + | Ftri3G25194 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.66 | 130,052.39 Da | 51.30 | 78.59 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 640 | 671 | 0.014 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 336 | 383 | 0.057 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 108 | 144 | 0.0031 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 154 | 186 | 0.01 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 65 | 673 | 4.71E-50 | IPR036322 |
| SUPERFAMILY | SSF117289 | Nucleoporin domain | 244 | 463 | 6.02E-13 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 30 | 262 | 1.8E-39 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 292 | 553 | 2.0E-19 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 554 | 720 | 1.3E-21 | IPR015943 |
| SMART | SM00320 | WD40_4 | 498 | 537 | 0.0018 | IPR001680 |
| SMART | SM00320 | WD40_4 | 231 | 265 | 170.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 588 | 629 | 32.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 103 | 144 | 3.2E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 441 | 494 | 0.95 | IPR001680 |
| SMART | SM00320 | WD40_4 | 147 | 187 | 1.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 632 | 671 | 4.2E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 343 | 383 | 2.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 540 | 585 | 1.5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 287 | 321 | 25.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 59 | 100 | 14.0 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 639 | 672 | 9.230148 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 370 | 384 | 8.870959 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 639 | 672 | 11.009724 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 505 | 546 | 8.804123 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1005 | 1055 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G09080.4 | - | 0 |
| RefSeq | XP_022034050.1 | WD repeat-containing protein 62 isoform X1 [Helianthus annuus] | 0 |
| Q6NS57 | Mitogen-activated protein kinase-binding protein 1 OS=Mus musculus OX=10090 GN=Mapkbp1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5N6NU33 | WD_REPEATS_REGION domain-containing protein OS=Mikania micrantha OX=192012 GN=E3N88_17745 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg14799 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30285450 |
| Apiaceae | Apium graveolens | 1 | Ag5G02363 |
| Asteraceae | Flaveria trinervia | 1 | Ftri3G25194 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G09080.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10022253m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g07530.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB07g058390.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G1051 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl08G1076, Cgl08G1077 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.1010s00004.v1.0 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.1069 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00006461 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G09988 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_1_RagTag.1767 |
| Salicaceae | Populus euphratica | 1 | populus_peu11401 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132630690 |
| Solanaceae | Solanum chilense | 1 | SOLCI000172200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107029641 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_4371 |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G1795 |