Basic Information
Locus ID:
Ftri3G24222
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
PAPA-1-like conserved region
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 85908899 | 85913811 | - | Ftri3G24222 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.20 | 55,561.28 Da | 51.64 | 55.59 | -1.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04795 | PAPA-1-like conserved region | 357 | 441 | 5.1E-18 | IPR006880 |
| Pfam | PF04438 | HIT zinc finger | 459 | 489 | 6.8E-6 | IPR007529 |
| SMART | SM01406 | PAPA_1_2 | 357 | 442 | 9.0E-30 | IPR006880 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 348 | 382 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 37 | 53 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 308 | 335 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 192 | 217 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 69 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 238 | 382 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 178 | 217 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 120 | 163 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 146 | 160 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 238 | 267 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 287 | 307 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 120 | 138 | - | - |
| Coils | Coil | Coil | 346 | 383 | - | - |
| Coils | Coil | Coil | 395 | 415 | - | - |
Gene Ontology
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G47350.1 | HIT zinc finger ;PAPA-1-like conserved region. | 0 |
| RefSeq | XP_021969415.1 | uncharacterized protein LOC110864608 [Helianthus annuus] | 0 |
| TrEMBL | A0A251UFK3 | Putative HIT zinc finger, PAPA-1-like conserved region OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr06g0168121 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology