Basic Information
Locus ID:
Ftri3G21947
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 84244927 | 84246885 | + | Ftri3G21947 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.44 | 38,099.47 Da | 54.36 | 90.26 | 0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 297 | 339 | 3.75123E-15 | - |
| Pfam | PF13947 | Wall-associated receptor kinase galacturonan-binding | 28 | 95 | 2.5E-15 | IPR025287 |
| Pfam | PF13639 | Ring finger domain | 296 | 339 | 5.6E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 289 | 342 | 2.67E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 265 | 344 | 3.1E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 297 | 338 | 3.4E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 297 | 339 | 12.223724 | IPR001841 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G46495.2 | - | 0 |
| RefSeq | XP_022041798.1 | putative RING-H2 finger protein ATL21A [Helianthus annuus] | 0 |
| P0CH01 | Putative RING-H2 finger protein ATL21A OS=Arabidopsis thaliana OX=3702 GN=ATL21A PE=3 SV=1 | 0 | |
| TrEMBL | A0A251UJ60 | Putative RING/U-box superfamily protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr06g0170691 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology