Basic Information
Locus ID:
Ftri3G21437
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 83663265 | 83670491 | + | Ftri3G21437 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.94 | 48,996.46 Da | 44.41 | 96.97 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 115 | 407 | 2.27252E-55 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 113 | 149 | 3.2E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 370 | 407 | 2.6E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 200 | 237 | 7.4E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 325 | 364 | 0.0072 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 160 | 195 | 0.0028 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 109 | 407 | 7.06E-67 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 106 | 370 | 1.2E-61 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 371 | 431 | 7.5E-11 | IPR015943 |
| SMART | SM00320 | WD40_4 | 111 | 150 | 6.1E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 323 | 365 | 0.14 | IPR001680 |
| SMART | SM00320 | WD40_4 | 368 | 408 | 2.7E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 198 | 237 | 1.2E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 156 | 195 | 7.8E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 239 | 279 | 5.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 281 | 319 | 18.0 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 163 | 200 | 10.917412 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 216 | 239 | 9.271977 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 163 | 204 | 14.284707 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 351 | 374 | 8.971213 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 375 | 410 | 11.391954 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 118 | 151 | 12.881143 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 118 | 151 | 10.706503 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 375 | 417 | 13.783434 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 224 | 238 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 137 | 151 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 224 | 238 | 2.8E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 137 | 151 | 2.8E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 395 | 409 | 2.8E-5 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G08560.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_035830312.1 | WD repeat-containing protein 26 homolog [Helianthus annuus] | 0 |
| Q9FNN2 | WD repeat-containing protein 26 homolog OS=Arabidopsis thaliana OX=3702 GN=WDR26 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5N6NTI5 | WD_REPEATS_REGION domain-containing protein OS=Mikania micrantha OX=192012 GN=E3N88_17064 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology