Basic Information
Locus ID:
Ftri3G20538
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
DEAD/DEAH box helicase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 83395447 | 83399648 | - | Ftri3G20538 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.08 | 46,264.75 Da | 36.79 | 96.22 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 248 | 378 | 5.44072E-63 | - |
| CDD | cd18045 | DEADc_EIF4AIII_DDX48 | 37 | 237 | 7.04214E-118 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 261 | 369 | 8.7E-32 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 60 | 222 | 6.1E-42 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 103 | 391 | 1.0E-73 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 244 | 408 | 2.0E-60 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 25 | 243 | 4.0E-64 | IPR027417 |
| SMART | SM00490 | helicmild6 | 288 | 369 | 9.0E-36 | IPR001650 |
| SMART | SM00487 | ultradead3 | 54 | 251 | 7.8E-56 | IPR014001 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 66 | 236 | 26.843748 | IPR014001 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 35 | 63 | 11.176648 | IPR014014 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 247 | 408 | 27.533497 | IPR001650 |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G19760.1 | eukaryotic initiation factor 4A-III. Encodes an RNA helicase that may be a component of the Exon Junction Complex. Subcellular localization is modulated by stress. Under normal conditions it is localized to the nuceloplasm but under hyopoxic conditions it localizes to the nucleolus and splicing speckles. | 0 |
| RefSeq | XP_024993567.1 | eukaryotic initiation factor 4A-3 [Cynara cardunculus var. scolymus] | 0 |
| P41380 | Eukaryotic initiation factor 4A-3 OS=Nicotiana plumbaginifolia OX=4092 PE=2 SV=1 | 0 | |
| TrEMBL | A0A251UHB0 | Putative eukaryotic initiation factor 4A-3 OS=Helianthus annuus OX=4232 GN=IF4A3 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology