Basic Information
Locus ID:
Ftri3G20290
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
Blue copper
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 78604047 | 78605569 | - | Ftri3G20290 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.37 | 28,235.70 Da | 24.84 | 77.34 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04216 | Phytocyanin | 130 | 225 | 1.72103E-35 | - |
| CDD | cd04216 | Phytocyanin | 29 | 121 | 1.77732E-29 | - |
| Pfam | PF02298 | Plastocyanin-like domain | 29 | 113 | 4.0E-18 | IPR003245 |
| Pfam | PF02298 | Plastocyanin-like domain | 138 | 219 | 9.5E-20 | IPR003245 |
| SUPERFAMILY | SSF49503 | Cupredoxins | 129 | 226 | 1.58E-27 | IPR008972 |
| SUPERFAMILY | SSF49503 | Cupredoxins | 28 | 121 | 5.06E-21 | IPR008972 |
| Gene3D | G3DSA:2.60.40.420 | - | 18 | 124 | 2.0E-22 | IPR008972 |
| Gene3D | G3DSA:2.60.40.420 | - | 128 | 231 | 1.6E-29 | IPR008972 |
| ProSiteProfiles | PS51485 | Phytocyanin domain profile. | 23 | 123 | 26.921152 | IPR003245 |
| ProSiteProfiles | PS51485 | Phytocyanin domain profile. | 128 | 227 | 29.723753 | IPR003245 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G27035.1 | early nodulin-like protein 20. Has been classified as a stellacyanin. Has also been classified as an early nodulin-like protein (ENODL), because it does not have a His residue involved in Cu binding. ENODLs are proteins having one plastocyanin-like (PCNL) domain lacking the amino acid residues necessary for Cu binding. | 0 |
| RefSeq | XP_021968849.1 | blue copper protein 1a [Helianthus annuus] | 0 |
| G7L0H3 | Blue copper protein 1a OS=Medicago truncatula OX=3880 GN=MTR_7g086140 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5N6NTK1 | Phytocyanin domain-containing protein OS=Mikania micrantha OX=192012 GN=E3N88_17389 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology