Basic Information
Locus ID:
Ftri3G17723
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
Holliday junction DNA helicase ruvB N-terminus
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 87405341 | 87409987 | + | Ftri3G17723 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.85 | 89,240.83 Da | 47.54 | 84.75 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00009 | AAA | 542 | 670 | 1.26587E-23 | - |
| Pfam | PF17862 | AAA+ lid domain | 682 | 724 | 1.4E-11 | IPR041569 |
| Pfam | PF00004 | ATPase family associated with various cellular activities (AAA) | 544 | 671 | 1.7E-37 | IPR003959 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 504 | 725 | 2.4E-52 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 94 | 380 | 1.11E-5 | IPR027417 |
| Gene3D | G3DSA:1.10.8.60 | - | 672 | 762 | 5.2E-81 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 503 | 770 | 5.2E-81 | IPR027417 |
| SMART | SM00382 | AAA_5 | 104 | 335 | 21.0 | IPR003593 |
| SMART | SM00382 | AAA_5 | 540 | 679 | 1.7E-18 | IPR003593 |
| ProSitePatterns | PS00674 | AAA-protein family signature. | 647 | 666 | - | IPR003960 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 436 | 457 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 435 | 480 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G64110.2 | P-loop containing nucleoside triphosphate hydrolases superfamily protein. | 0 |
| RefSeq | XP_021969201.1 | spastin [Helianthus annuus] | 0 |
| Q6NW58 | Spastin OS=Danio rerio OX=7955 GN=spast PE=2 SV=2 | 0 | |
| TrEMBL | A0A251UFV0 | Putative P-loop containing nucleoside triphosphate hydrolases superfamily protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr06g0166261 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology