Basic Information
Locus ID:
Ftri3G16256
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
transcription factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 84033041 | 84035060 | - | Ftri3G16256 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.31 | 53,208.45 Da | 43.67 | 76.55 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd11449 | bHLH_AtAIB_like | 288 | 361 | 1.41257E-39 | - |
| Pfam | PF14215 | bHLH-MYC and R2R3-MYB transcription factors N-terminal | 34 | 76 | 4.0E-9 | IPR025610 |
| Pfam | PF14215 | bHLH-MYC and R2R3-MYB transcription factors N-terminal | 87 | 182 | 1.7E-20 | IPR025610 |
| Pfam | PF00010 | Helix-loop-helix DNA-binding domain | 293 | 338 | 5.3E-11 | IPR011598 |
| SUPERFAMILY | SSF47459 | HLH, helix-loop-helix DNA-binding domain | 291 | 354 | 2.75E-18 | IPR036638 |
| Gene3D | G3DSA:4.10.280.10 | - | 282 | 355 | 4.5E-18 | IPR036638 |
| SMART | SM00353 | finulus | 295 | 344 | 3.1E-16 | IPR011598 |
| ProSiteProfiles | PS50888 | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 289 | 338 | 17.135923 | IPR011598 |
| Coils | Coil | Coil | 328 | 362 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G17880.1 | Basic helix-loop-helix (bHLH) DNA-binding family protein. | 0 |
| RefSeq | XP_021969708.1 | transcription factor MYC2 isoform X1 [Helianthus annuus] | 0 |
| O49687 | Transcription factor MYC4 OS=Arabidopsis thaliana OX=3702 GN=MYC4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5N6NQS8 | BHLH domain-containing protein OS=Mikania micrantha OX=192012 GN=E3N88_17027 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology