Basic Information
Locus ID:
Ftri3G15988
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 23514858 | 23519638 | - | Ftri3G15988 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.40 | 69,911.90 Da | 37.49 | 78.34 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18794 | SF2_C_RecQ | 414 | 547 | 4.93204E-65 | - |
| CDD | cd17920 | DEXHc_RecQ | 225 | 413 | 8.9583E-82 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 233 | 401 | 5.3E-16 | IPR011545 |
| Pfam | PF16124 | RecQ zinc-binding | 550 | 618 | 6.0E-15 | IPR032284 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 430 | 537 | 1.2E-15 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 412 | 619 | 5.54E-49 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 136 | 553 | 7.89E-33 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 414 | 620 | 3.0E-62 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 193 | 413 | 2.3E-71 | IPR027417 |
| SMART | SM00487 | ultradead3 | 227 | 422 | 8.8E-21 | IPR014001 |
| SMART | SM00490 | helicmild6 | 456 | 538 | 1.0E-23 | IPR001650 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 225 | 619 | 1.1E-142 | IPR004589 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 428 | 585 | 18.724937 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 239 | 413 | 17.387499 | IPR014001 |
| ProSitePatterns | PS00690 | DEAH-box subfamily ATP-dependent helicases signature. | 352 | 361 | - | IPR002464 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 153 | 176 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G05740.1 | RECQ helicase l1. | 0 |
| RefSeq | XP_022010612.1 | ATP-dependent DNA helicase Q-like 1 [Helianthus annuus] | 0 |
| Q9FT74 | ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis thaliana OX=3702 GN=RECQL1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A251S4W7 | ATP-dependent DNA helicase OS=Helianthus annuus OX=4232 GN=RECQI1 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology