Basic Information
Locus ID:
Ftri3G12564
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
Belongs to the glycosyl hydrolase 18 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 71252317 | 71253537 | - | Ftri3G12564 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.86 | 42,880.36 Da | 30.10 | 80.63 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02879 | GH18_plant_chitinase_class_V | 37 | 371 | 5.87483E-136 | - |
| Pfam | PF00704 | Glycosyl hydrolases family 18 | 38 | 365 | 2.2E-72 | IPR001223 |
| SUPERFAMILY | SSF54556 | Chitinase insertion domain | 271 | 336 | 1.37E-10 | IPR029070 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 38 | 365 | 1.11E-72 | IPR017853 |
| Gene3D | G3DSA:3.10.50.10 | - | 270 | 336 | 7.7E-102 | IPR029070 |
| Gene3D | G3DSA:3.20.20.80 | Glycosidases | 50 | 366 | 7.7E-102 | - |
| SMART | SM00636 | 2g34 | 34 | 365 | 1.5E-93 | IPR011583 |
| ProSiteProfiles | PS51910 | Glycosyl hydrolases family 18 (GH18) domain profile. | 34 | 380 | 65.693962 | IPR001223 |
| ProSitePatterns | PS01095 | Glycosyl hydrolases family 18 (GH18) active site signature. | 140 | 148 | - | IPR001579 |
Gene Ontology
Biological Process:
KEGG Pathway
KO Term:
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19810.1 | Glycosyl hydrolase family protein with chitinase insertion domain. | 0 |
| RefSeq | XP_021984922.1 | class V chitinase CHIT5a isoform X2 [Helianthus annuus] | 0 |
| A0A072VEP0 | Class V chitinase CHIT5a OS=Medicago truncatula OX=3880 GN=CHIT5A PE=1 SV=1 | 0 | |
| TrEMBL | A0A251TH53 | Putative glycoside hydrolase family 18, catalytic domain-containing protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr10g0281681 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology