Basic Information
Locus ID:
Ftri3G08771
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 77547233 | 77550494 | + | Ftri3G08771 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.66 | 96,291.52 Da | 52.30 | 62.00 | -0.72 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 371 | 403 | 3.0E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 517 | 554 | 3.2E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 476 | 512 | 3.2E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 650 | 687 | 0.0075 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 367 | 692 | 4.95E-58 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 307 | 442 | 7.6E-10 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 468 | 721 | 1.7E-51 | IPR015943 |
| SMART | SM00320 | WD40_4 | 606 | 646 | 27.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 365 | 404 | 2.8E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 557 | 595 | 9.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 515 | 554 | 2.6E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 473 | 512 | 3.0E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 647 | 688 | 0.0016 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 480 | 515 | 13.131947 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 521 | 555 | 13.516088 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 521 | 555 | 11.207411 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 665 | 687 | 9.138305 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 372 | 406 | 11.233774 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 372 | 413 | 13.816853 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 480 | 521 | 16.690819 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 499 | 513 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 391 | 405 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 391 | 405 | 1.3E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 499 | 513 | 1.3E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 541 | 555 | 1.3E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 318 | 348 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 258 | 288 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 752 | 808 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 258 | 296 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 791 | 808 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 315 | 350 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 434 | 458 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 757 | 784 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 90 | 125 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G37670.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_021970276.1 | WD repeat-containing protein 44 [Helianthus annuus] | 0 |
| Q9XSC3 | WD repeat-containing protein 44 OS=Bos taurus OX=9913 GN=WDR44 PE=1 SV=1 | 0 | |
| TrEMBL | A0A251UHV3 | Putative apoptotic protease-activating factor 1 OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr06g0176891 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology