Basic Information
Locus ID:
Ftri3G08687
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
C1 domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 77191963 | 77193009 | + | Ftri3G08687 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.60 | 39,957.12 Da | 59.88 | 79.02 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03107 | C1 domain | 151 | 199 | 2.2E-8 | IPR004146 |
| Pfam | PF03107 | C1 domain | 28 | 77 | 4.5E-10 | IPR004146 |
| Pfam | PF03107 | C1 domain | 88 | 139 | 1.1E-7 | IPR004146 |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 8 | 89 | 8.37E-16 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 253 | 292 | 4.59E-5 | - |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 122 | 202 | 5.75E-16 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 251 | 338 | 3.6E-5 | IPR013083 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G50190.1 | Cysteine/Histidine-rich C1 domain family protein. | 0 |
| RefSeq | XP_035846515.1 | uncharacterized protein LOC110939808 isoform X3 [Helianthus annuus] | 0 |
| TrEMBL | A0A251UML1 | Putative DC1, C1-like protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr05g0131841 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 6 | jg35663, jg8188, jg8412, jg8450, jg8451, jg8457 |
| Apiaceae | Apium graveolens | 5 | Ag10G00884, Ag1G00153, Ag1G00315, Ag8G00374, Ag8G01874 |
| Asteraceae | Flaveria trinervia | 12 | Ftri10G04197, Ftri15G15158, Ftri15G19898, Ftri1G06516 ... |
| Brassicaceae | Arabidopsis thaliana | 35 | AT1G58037.1, AT2G04680.1, AT2G19650.1, AT2G19660.1 ... |
| Brassicaceae | Eutrema salsugineum | 34 | Thhalv10001923m.g.v1.0, Thhalv10002199m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 5 | Sp2g06340.v2.2, Sp5g15690.v2.2, Sp7g01400.v2.2 ... |
| Brassicaceae | Brassica nigra | 39 | BniB01g002950.2N, BniB01g004980.2N, BniB01g026110.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 17 | Ceq01G2298, Ceq02G1953, Ceq03G0083, Ceq03G0113, Ceq03G0190 ... |
| Casuarinaceae | Casuarina glauca | 23 | Cgl01G2601, Cgl01G2602, Cgl01G2604, Cgl03G0217, Cgl03G0218 ... |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 6 | nbisL1-mrna-3679, nbisL1-mrna-5622, nbisL1-mrna-8116 ... |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G17998 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-17876 |
| Salicaceae | Populus euphratica | 4 | populus_peu26078, populus_peu26197, populus_peu26198 ... |