Basic Information
Locus ID:
Ftri3G08493
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 73071996 | 73075174 | - | Ftri3G08493 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.12 | 54,150.24 Da | 45.68 | 87.72 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13857 | Ankyrin repeats (many copies) | 224 | 266 | 6.5E-9 | - |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 88 | 210 | 1.1E-12 | IPR020683 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 20 | 81 | 1.2E-7 | IPR020683 |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 20 | 282 | 1.71E-47 | IPR036770 |
| SUPERFAMILY | SSF57850 | RING/U-box | 321 | 378 | 5.05E-5 | - |
| Gene3D | G3DSA:1.25.40.20 | - | 13 | 148 | 1.2E-30 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 156 | 288 | 3.3E-21 | IPR036770 |
| SMART | SM00248 | ANK_2a | 83 | 112 | 0.036 | IPR002110 |
| SMART | SM00248 | ANK_2a | 50 | 79 | 3.6E-5 | IPR002110 |
| SMART | SM00248 | ANK_2a | 224 | 253 | 3.4E-5 | IPR002110 |
| SMART | SM00248 | ANK_2a | 181 | 210 | 2.9E-4 | IPR002110 |
| SMART | SM00248 | ANK_2a | 117 | 147 | 130.0 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 117 | 138 | 8.923309 | IPR002110 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 322 | 372 | 9.214112 | IPR001841 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 181 | 213 | 11.674439 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 83 | 115 | 8.68292 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 181 | 210 | 10.789545 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 50 | 82 | 13.30375 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 224 | 256 | 12.50245 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 117 | 138 | 8.905817 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 50 | 82 | 11.930395 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 224 | 256 | 11.134453 | - |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 337 | 346 | - | IPR017907 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G57740.1 | XB3 ortholog 2 in Arabidopsis thaliana. ubiquitin ligase | 0 |
| RefSeq | XP_035830677.1 | E3 ubiquitin-protein ligase XBAT32 isoform X2 [Helianthus annuus] | 0 |
| Q6KAE5 | Probable E3 ubiquitin-protein ligase XBOS32 OS=Oryza sativa subsp. japonica OX=39947 GN=XBOS32 PE=2 SV=2 | 0 | |
| TrEMBL | A0A251TH93 | Putative E3 ubiquitin-protein ligase XBOS35 OS=Helianthus annuus OX=4232 GN=XB35 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology