Basic Information
Locus ID:
Ftri3G03542
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
von Willebrand factor type A domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 83253701 | 83254417 | + | Ftri3G03542 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.00 | 22,480.13 Da | 70.62 | 66.92 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 108 | 149 | 1.7E-6 | IPR018957 |
| SUPERFAMILY | SSF57850 | RING/U-box | 108 | 156 | 1.14E-8 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 104 | 184 | 8.9E-7 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 108 | 150 | 9.317383 | IPR001841 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G49665.1 | Zinc finger (C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_021998514.1 | E3 ubiquitin-protein ligase WAV3 [Helianthus annuus] | 0 |
| Q9LTA6 | E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana OX=3702 GN=WAV3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5N6MKJ0 | RING-type domain-containing protein OS=Mikania micrantha OX=192012 GN=E3N88_30068 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Asteraceae | Flaveria trinervia | 3 | Ftri13G26327, Ftri3G03542, Ftri8G07275 |
| Brassicaceae | Brassica nigra | 1 | BniB05g046860.2N |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_044936, gene-QYE76_061876, gene-QYE76_070877 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC3AG034800 |
| Solanaceae | Solanum chilense | 1 | SOLCI004069200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107009889 |