Basic Information
Locus ID:
Ftri2G30676
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Short Name:
SERK1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 2270654 | 2275585 | + | Ftri2G30676 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.45 | 68,696.08 Da | 39.80 | 98.72 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 302 | 572 | 5.0E-44 | IPR000719 |
| Pfam | PF00560 | Leucine Rich Repeat | 93 | 115 | 1.0 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 26 | 65 | 1.9E-9 | IPR013210 |
| Pfam | PF00560 | Leucine Rich Repeat | 165 | 181 | 1.4 | IPR001611 |
| SUPERFAMILY | SSF52058 | L domain-like | 28 | 190 | 1.59E-39 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 280 | 576 | 2.87E-78 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 378 | 595 | 4.0E-70 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 25 | 211 | 2.9E-62 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 270 | 377 | 8.9E-40 | - |
| SMART | SM00220 | serkin_6 | 301 | 575 | 3.8E-33 | IPR000719 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 165 | 187 | 7.157505 | IPR001611 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 301 | 588 | 36.357609 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 424 | 436 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 307 | 329 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G71830.1 | somatic embryogenesis receptor-like kinase 1. Plasma membrane LRR receptor-like serine threonine kinase expressed during embryogenesis in locules until stage 6 anthers, with higher expression in the tapetal cell layer. SERK1 and SERK2 receptor kinases function redundantly as an important control point for sporophytic development controlling male gametophyte production. later | 0 |
| RefSeq | XP_021987185.1 | somatic embryogenesis receptor kinase 1 [Helianthus annuus] | 0 |
| Q94AG2 | Somatic embryogenesis receptor kinase 1 OS=Arabidopsis thaliana OX=3702 GN=SERK1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A251TFZ8 | Putative somatic embryogenesis receptor-like kinase 1 OS=Helianthus annuus OX=4232 GN=SERK1 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology