Basic Information
Locus ID:
Ftri2G29946
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 63971357 | 63975835 | - | Ftri2G29946 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.33 | 56,218.34 Da | 63.27 | 88.12 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 259 | 307 | 1.77345E-14 | - |
| Pfam | PF12906 | RING-variant domain | 259 | 306 | 1.0E-9 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 255 | 310 | 3.27E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 246 | 314 | 1.9E-14 | IPR013083 |
| SMART | SM00744 | ringv_2 | 258 | 307 | 1.8E-17 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 251 | 313 | 18.290707 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 222 | 251 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 228 | 242 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 492 | 515 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60580.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_024985748.1 | uncharacterized protein LOC112521239 [Cynara cardunculus var. scolymus] | 0 |
| TrEMBL | A0A2U1MFD0 | RING/U-box superfamily protein OS=Artemisia annua OX=35608 GN=CTI12_AA385250 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology