Basic Information
Locus ID:
Ftri2G29718
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
glycerophosphoryl diester phosphodiesterase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 3934819 | 3942554 | - | Ftri2G29718 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.40 | 71,103.90 Da | 37.88 | 95.52 | -0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 401 | 545 | 9.1E-8 | IPR030395 |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 222 | 344 | 3.9E-15 | IPR030395 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 3 | 194 | 1.36E-20 | IPR017946 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 215 | 550 | 3.66E-39 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 213 | 550 | 6.9E-41 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 1 | 196 | 1.4E-15 | IPR017946 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 1 | 199 | 19.518349 | IPR030395 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 215 | 550 | 29.709074 | IPR030395 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 610 | 625 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 605 | 625 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G26690.1 | PLC-like phosphodiesterase family protein. Glycerophosphoryl diester phosphodiesterase-like protein involved in cell wall cellulose accumulation and pectin linking. Impacts root hair, trichome and epidermal cell development. | 0 |
| RefSeq | XP_021978209.1 | glycerophosphodiester phosphodiesterase GDPDL3 [Helianthus annuus] | 0 |
| Q9SZ11 | Glycerophosphodiester phosphodiesterase GDPDL3 OS=Arabidopsis thaliana OX=3702 GN=GDPDL3 PE=2 SV=3 | 0 | |
| TrEMBL | A0A251U8J0 | glycerophosphodiester phosphodiesterase OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr08g0233141 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology