Basic Information
Locus ID:
Ftri2G21553
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
Belongs to the histone deacetylase family. HD Type 1 subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 8917595 | 8922083 | + | Ftri2G21553 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.73 | 51,049.69 Da | 41.96 | 72.69 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09991 | HDAC_classI | 26 | 333 | 0.0 | - |
| Pfam | PF00850 | Histone deacetylase domain | 40 | 331 | 7.8E-85 | IPR023801 |
| SUPERFAMILY | SSF52768 | Arginase/deacetylase | 21 | 386 | 1.92E-124 | IPR023696 |
| Gene3D | G3DSA:3.40.800.20 | Histone deacetylase domain | 19 | 394 | 2.4E-137 | IPR037138 |
| PIRSF | PIRSF037913 | HDAC_I_euk | 8 | 452 | 1.8E-206 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 170 | 186 | 1.3E-62 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 75 | 93 | 1.3E-62 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 246 | 264 | 1.3E-62 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 108 | 125 | 1.3E-62 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 229 | 242 | 1.3E-62 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 42 | 59 | 1.3E-62 | IPR003084 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 183 | 198 | 1.8E-24 | IPR000286 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 151 | 174 | 1.8E-24 | IPR000286 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 268 | 278 | 1.8E-24 | IPR000286 |
| PRINTS | PR01271 | Histone deacetylase signature | 129 | 149 | 1.3E-62 | IPR003084 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 407 | 440 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 391 | 453 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G63110.1 | histone deacetylase 6. RPD3-like histone deacetylase. HDA6 mutations specifically increase the expression of auxin-responsive transgenes, suggesting a role in transgene silencing. | 0 |
| RefSeq | XP_021978414.1 | histone deacetylase 6 [Helianthus annuus] | 0 |
| Q9FML2 | Histone deacetylase 6 OS=Arabidopsis thaliana OX=3702 GN=HDA6 PE=1 SV=1 | 0 | |
| TrEMBL | A0A251U840 | Histone deacetylase OS=Helianthus annuus OX=4232 GN=HDA6 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology