Basic Information
Locus ID:
Ftri2G18215
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
TPL-binding domain in jasmonate signalling
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 63588195 | 63594579 | + | Ftri2G18215 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.43 | 91,919.23 Da | 41.90 | 78.46 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd15539 | PHD1_AIRE | 470 | 509 | 9.17598E-17 | - |
| Pfam | PF16135 | Tify domain binding domain | 404 | 454 | 5.7E-14 | IPR032308 |
| Pfam | PF16135 | Tify domain binding domain | 215 | 270 | 7.9E-17 | IPR032308 |
| SUPERFAMILY | SSF55729 | Acyl-CoA N-acyltransferases (Nat) | 721 | 812 | 7.54E-9 | IPR016181 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 565 | 622 | 8.42E-7 | IPR011011 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 463 | 514 | 6.58E-14 | IPR011011 |
| Gene3D | G3DSA:3.40.630.30 | - | 673 | 834 | 1.4E-7 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 455 | 538 | 3.7E-17 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 562 | 624 | 3.0E-11 | IPR013083 |
| SMART | SM00249 | PHD_3 | 470 | 510 | 1.9E-9 | IPR001965 |
| SMART | SM00249 | PHD_3 | 565 | 622 | 5.9E-4 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 468 | 512 | 9.579 | IPR019787 |
| ProSiteProfiles | PS51186 | Gcn5-related N-acetyltransferase (GNAT) domain profile. | 672 | 833 | 10.535007 | IPR000182 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 471 | 509 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 326 | 368 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 340 | 365 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 43 | 73 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G27980.1 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain. | 0 |
| RefSeq | XP_024987180.1 | uncharacterized protein LOC112522291 [Cynara cardunculus var. scolymus] | 0 |
| F4IXE7 | Increased DNA methylation 1 OS=Arabidopsis thaliana OX=3702 GN=IDM1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5N6NY56 | PHD-type domain-containing protein OS=Mikania micrantha OX=192012 GN=E3N88_16380 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology