Basic Information
Locus ID:
Ftri2G16266
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 61926847 | 61932702 | - | Ftri2G16266 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.33 | 86,334.25 Da | 35.53 | 90.36 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02674 | Peptidase_C19R | 585 | 754 | 4.17905E-56 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 163 | 753 | 2.4E-82 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 161 | 756 | 4.51E-111 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 479 | 756 | 3.1E-55 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 155 | 367 | 1.1E-65 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 163 | 756 | 56.683228 | IPR028889 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 700 | 717 | - | IPR018200 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 164 | 179 | - | IPR018200 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G22030.1 | ubiquitin-specific protease 8. | 0 |
| RefSeq | XP_022025004.1 | ubiquitin carboxyl-terminal hydrolase 8 [Helianthus annuus] | 0 |
| Q9C585 | Ubiquitin carboxyl-terminal hydrolase 8 OS=Arabidopsis thaliana OX=3702 GN=UBP8 PE=2 SV=2 | 0 | |
| TrEMBL | A0A251VHJ3 | Ubiquitin carboxyl-terminal hydrolase OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr02g0053321 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology