Basic Information
Locus ID:
Ftri2G12729
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
Modified RING finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 9353065 | 9355390 | - | Ftri2G12729 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.89 | 77,322.45 Da | 45.16 | 106.84 | -0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 289 | 331 | 7.6239E-26 | - |
| Pfam | PF04564 | U-box domain | 286 | 355 | 1.5E-18 | IPR003613 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 420 | 454 | 1.3E-6 | IPR000225 |
| SUPERFAMILY | SSF57850 | RING/U-box | 277 | 358 | 3.85E-27 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 389 | 668 | 3.96E-35 | IPR016024 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 285 | 358 | 2.6E-26 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 377 | 677 | 2.3E-34 | IPR011989 |
| SMART | SM00185 | arm_5 | 416 | 457 | 0.19 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 288 | 351 | 2.7E-29 | IPR003613 |
| SMART | SM00185 | arm_5 | 542 | 583 | 29.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 458 | 499 | 8.3 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 428 | 470 | 11.8474 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 284 | 358 | 37.118324 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G60190.1 | ARM repeat superfamily protein. | 0 |
| RefSeq | XP_022015620.1 | U-box domain-containing protein 19-like [Helianthus annuus] | 0 |
| O80742 | U-box domain-containing protein 19 OS=Arabidopsis thaliana OX=3702 GN=PUB19 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5N6NXD2 | RING-type E3 ubiquitin transferase OS=Mikania micrantha OX=192012 GN=E3N88_15481 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg25842, jg5483 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_13673, gene_3646 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah000646 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_5g116810, BVRB_6g149020 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg30506, Sbi_jg42945, Sbi_jg45553, Sbi_jg58740 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg11400, Seu_jg28612 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00002398, GOSA_00014965 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl35368, Sgl40724, Sgl55251, Sgl60511 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000004340, gene:ENSEOMG00000012771 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.5AG0022770, CQ.Regalona.r1.5BG0024160 ... |
| Anacardiaceae | Pistacia vera | 4 | pistato.v30138990, pistato.v30141280, pistato.v30141350 ... |
| Apiaceae | Apium graveolens | 1 | Ag8G02209 |
| Arecaceae | Cocos nucifera | 2 | COCNU_01G009080, COCNU_11G009020 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103710056 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.1567.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri16G33857, Ftri2G12729, Ftri8G04547 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G10560.1, AT1G60190.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10023320m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g09210.v2.2, Sp2g04480.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB04g029170.2N, BniB07g046170.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G1903 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G2086 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g07600 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g26490 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-11904 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG03.1047, evm.TU.LG10.780 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00022095, Pov_00022410 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb4G26282 |
| Poaceae | Echinochloa crus-galli | 4 | AH03.1772, AH08.1489, BH03.1925, CH08.1649 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_6AG0534000, gene-QOZ80_6BG0487040 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0198490.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_004918, gene-QYE76_031997 |
| Poaceae | Oryza coarctata | 4 | Oco15G008210, Oco16G007900, Oco17G003880, Oco18G003840 |
| Poaceae | Oryza sativa | 2 | LOC_Os08g32060.1, LOC_Os09g21120.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_02G170200, gene-BS78_07G133100 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0702363, Pt_Chr0702447 |
| Poaceae | Sporobolus alterniflorus | 8 | Chr10G010960, Chr11G011470, Chr13G022010, Chr20G006300 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G802500, Tel5E01G333500 |
| Poaceae | Triticum dicoccoides | 5 | gene_TRIDC2AG067190, gene_TRIDC2AG078570 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS2A02G475600.1.cds1, TraesCS2B02G499300.1.cds1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb178990_P001, Zm00001eb311590_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-19948, nbis-gene-45076 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g22984, Zma_g32473 |
| Portulacaceae | Portulaca oleracea | 9 | evm.TU.LG01.2499, evm.TU.LG02.916, evm.TU.LG03.1904 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g15410 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_11_RagTag.1004 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-14686, nbisL1-mrna-23082 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-8419 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-12569 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000010l.37 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00009054 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-17051, nbisL1-mrna-21195 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-17774, nbisL1-mrna-8640 |
| Salicaceae | Populus euphratica | 2 | populus_peu28618, populus_peu30076 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132632770, gene-LOC132641363 |
| Solanaceae | Solanum chilense | 1 | SOLCI003617900 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107012998, gene-LOC107018908 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.15534_chr06_-, gene_2911 |
| Tamaricaceae | Tamarix chinensis | 1 | TC11G0936 |