Basic Information
Locus ID:
Ftri2G01683
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Short Name:
CMT1
Description:
Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 62641965 | 62653910 | - | Ftri2G01683 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.47 | 93,004.00 Da | 31.44 | 79.20 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18635 | CD_CMT3_like | 374 | 430 | 3.34441E-28 | - |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 439 | 792 | 1.9E-33 | IPR001525 |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 375 | 431 | 4.9E-10 | IPR023780 |
| Pfam | PF01426 | BAH domain | 114 | 215 | 3.8E-10 | IPR001025 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 268 | 796 | 6.29E-72 | IPR029063 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 365 | 435 | 5.67E-12 | IPR016197 |
| Gene3D | G3DSA:2.30.30.490 | - | 44 | 209 | 3.9E-52 | IPR043151 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 374 | 809 | 8.4E-192 | - |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 594 | 762 | 8.4E-192 | - |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 251 | 361 | 2.5E-15 | - |
| SMART | SM00439 | BAH_4 | 105 | 223 | 6.5E-12 | IPR001025 |
| SMART | SM00298 | chromo_7 | 374 | 433 | 1.1E-7 | IPR000953 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 269 | 803 | 44.224953 | IPR001525 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 375 | 428 | 12.539401 | IPR000953 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 105 | 224 | 16.358295 | IPR001025 |
| ProSitePatterns | PS00598 | Chromo domain signature. | 398 | 418 | - | IPR023779 |
| ProSitePatterns | PS00094 | C-5 cytosine-specific DNA methylases active site. | 445 | 457 | - | IPR018117 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 534 | 547 | 1.8E-11 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 270 | 286 | 1.8E-11 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 488 | 502 | 1.8E-11 | IPR001525 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 40 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G69770.1 | chromomethylase 3. Encodes a chromomethylase involved in methylating cytosine residues at non-CG sites. Involved in preferentially methylating transposon-related sequences, reducing their mobility. CMT3 interacts with an Arabidopsis homologue of HP1 (heterochromatin protein 1), which in turn interacts with methylated histones. Involved in gene silencing. | 0 |
| RefSeq | XP_022025590.1 | DNA (cytosine-5)-methyltransferase 1 [Helianthus annuus] | 0 |
| Q9AXT8 | DNA (cytosine-5)-methyltransferase 1 OS=Zea mays OX=4577 GN=MET2A PE=1 SV=1 | 0 | |
| TrEMBL | A0A251VID3 | Putative chromomethylase 1 OS=Helianthus annuus OX=4232 GN=CMT1 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology