Basic Information
Locus ID:
Ftri1G33111
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
zinc-ribbon
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 65599719 | 65610879 | - | Ftri1G33111 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.20 | 36,160.75 Da | 74.91 | 66.79 | -0.92 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14369 | zinc-ribbon | 34 | 68 | 2.0E-11 | IPR039525 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 25 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 30 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 138 | 183 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 72 | 98 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 138 | 159 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 160 | 183 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_024970290.1 | E3 ubiquitin-protein ligase CIP8 [Cynara cardunculus var. scolymus] | 0 |
| TrEMBL | A0A118K4D2 | RING-type E3 ubiquitin transferase OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_014281 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg10541, jg6355 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_8451 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah036218 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg40032, Sbi_jg55359 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg14301 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00014051 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl12191, Sgl17563 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000016823, gene:ENSEOMG00000033883 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0021160, CQ.Regalona.r1.1BG0003270 |
| Apiaceae | Apium graveolens | 1 | Ag3G02533 |
| Asteraceae | Flaveria trinervia | 4 | Ftri18G33999, Ftri1G22102, Ftri1G33111, Ftri8G11086 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G64920.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10005668m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g28000.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB03g033760.2N, BniB03g033770.2N |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G0948 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00002567 |
| Poaceae | Echinochloa crus-galli | 2 | AH06.2374, BH06.2166 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0545610, gene-QOZ80_6BG0499100 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0722700.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_035157 |
| Poaceae | Oryza coarctata | 2 | Oco11G013330, Oco12G013470 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g42700.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G199300 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr10G018460, Chr11G004120 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G662300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG054450, gene_TRIDC7BG047190 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G391700.1.cds1, TraesCS7B02G293600.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb387590_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-40957, nbis-gene-9975 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g30851, Zma_g33102 |
| Portulacaceae | Portulaca oleracea | 5 | evm.TU.LG04.3350, evm.TU.LG12.1659, evm.TU.LG14.856 ... |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132613824 |
| Solanaceae | Solanum chilense | 1 | SOLCI000622900 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107031553 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.31285_chr11_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC04G2884 |