Basic Information
Locus ID:
Ftri1G29466
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
Ribosomal protein TL5, C-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 9723928 | 9728420 | - | Ftri1G29466 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.35 | 26,050.82 Da | 38.15 | 95.74 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00495 | Ribosomal_L25_TL5_CTC | 24 | 138 | 2.05542E-8 | IPR029751 |
| Pfam | PF14693 | Ribosomal protein TL5, C-terminal domain | 146 | 231 | 1.2E-23 | IPR020057 |
| SUPERFAMILY | SSF50715 | Ribosomal protein L25-like | 29 | 230 | 2.75E-32 | IPR011035 |
| Gene3D | G3DSA:2.170.120.20 | Ribosomal protein L25, beta domain | 144 | 223 | 6.8E-21 | IPR037121 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G66860.1 | Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain. | 0 |
| RefSeq | XP_022012882.1 | 50S ribosomal protein L25 [Helianthus annuus] | 0 |
| Q7NNL2 | Large ribosomal subunit protein bL25 OS=Gloeobacter violaceus (strain ATCC 29082 / PCC 7421) OX=251221 GN=rplY PE=3 SV=1 | 0 | |
| TrEMBL | A0A251SBZ4 | Putative ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain-containing protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr15g0489951 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg17464, jg40068, jg7671 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_14698 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah004537 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_5g099720, BVRB_6g134520 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg12971, Sbi_jg23953, Sbi_jg52896, Sbi_jg7780 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg12245, Seu_jg8964 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00001120, GOSA_00010263 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl33987, Sgl39382, Sgl52128, Sgl57399 |
| Amaranthaceae | Chenopodium album | 5 | gene:ENSEOMG00000001951, gene:ENSEOMG00000006475 ... |
| Amaranthaceae | Chenopodium quinoa | 5 | CQ.Regalona.r1.5AG0006630, CQ.Regalona.r1.5BG0006890 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30206780 |
| Apiaceae | Apium graveolens | 3 | Ag4G01063, Ag9G01262, Ag9G02771 |
| Arecaceae | Cocos nucifera | 3 | COCNU_06G000890, COCNU_06G017520, COCNU_14G010460 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103697155, gene-LOC103709224 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_01.2029.V1.1, AsparagusV1_07.2941.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri1G29466, Ftri9G29306 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT4G23620.2, AT5G66860.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10004830m.g.v1.0, Thhalv10026041m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp2g29800.v2.2, Sp7g21540.v2.2 |
| Brassicaceae | Brassica nigra | 7 | BniB03g013580.2N, BniB04g010650.2N, BniB05g013580.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G1439 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G1470 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno06g03010, gene.Cymno11g03240 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0369s00011.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate02g34010, gene.Thate05g15250 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-1514, nbisL1-mrna-6620 |
| Nitrariaceae | Nitraria sibirica | 3 | evm.TU.LG02.2189, evm.TU.LG02.2387, evm.TU.LG10.1470 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00029152, Pov_00029304 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb2G08463, Lb5G27718 |
| Poaceae | Echinochloa crus-galli | 7 | AH01.1152, AH02.2205, BH01.1534, BH02.2280, CH01.1502 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_1AG0022980, gene-QOZ80_1BG0073070 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_053546, gene-QYE76_063620 |
| Poaceae | Oryza coarctata | 4 | Oco01G013770, Oco02G013900, Oco05G018130, Oco06G018950 |
| Poaceae | Oryza sativa | 3 | LOC_Os01g41030.1, LOC_Os03g41612.1, LOC_Os05g18750.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G153400, gene-BS78_03G181500 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0104350, Pt_Chr0104386, Pt_Chr0603185, Pt_Chr0603209 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr02G016460, Chr03G010170, Chr05G017460, Chr08G010440 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel3E01G368200, Tel4E01G129300 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC3AG031760, gene_TRIDC3BG036360 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS3A02G212900.1, TraesCS3B02G243200.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb219090_P002, Zm00001eb357570_P001 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-20342, nbis-gene-29348, nbis-gene-33837 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g8154, Zma_g939 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG04.3317, evm.TU.LG05.598, evm.TU.LG16.281 ... |
| Posidoniaceae | Posidonia oceanica | 3 | gene.Posoc03g22880, gene.Posoc04g06300, gene.Posoc04g23880 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_16_RagTag.128, evm.TU.Scaffold_6_RagTag.1910 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-17231 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-17123, nbisL1-mrna-4404 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-11877, nbisL1-mrna-20359 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000011l.1164, evm.TU.utg000022l.415 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00007694, Maker00014411 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-15530, nbisL1-mrna-3556 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-3182, nbisL1-mrna-6721 |
| Salicaceae | Populus euphratica | 4 | populus_peu03627, populus_peu14317, populus_peu14325 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132623217, gene-LOC132627001 |
| Solanaceae | Solanum chilense | 2 | SOLCI003512000, SOLCI006709400 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107003157, gene-LOC107008924 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.5432_chr03_+, gene_1316 |
| Tamaricaceae | Tamarix chinensis | 2 | TC03G2377, TC04G1694 |
| Zosteraceae | Zostera marina | 2 | Zosma03g03060.v3.1, Zosma05g24970.v3.1 |