Basic Information
Locus ID:
Ftri1G23261
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
Lysosomal alpha-mannosidase-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 2664269 | 2676556 | + | Ftri1G23261 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.06 | 120,533.67 Da | 36.66 | 83.03 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10810 | GH38N_AMII_LAM_like | 97 | 374 | 0.0 | - |
| Pfam | PF09261 | Alpha mannosidase middle domain | 415 | 506 | 1.9E-21 | IPR015341 |
| Pfam | PF01074 | Glycosyl hydrolases family 38 N-terminal domain | 98 | 410 | 1.2E-95 | IPR000602 |
| Pfam | PF07748 | Glycosyl hydrolases family 38 C-terminal domain | 659 | 872 | 1.5E-49 | IPR011682 |
| Pfam | PF17677 | Glycosyl hydrolases family 38 C-terminal beta sandwich domain | 955 | 1062 | 1.6E-10 | IPR041147 |
| SUPERFAMILY | SSF88713 | Glycoside hydrolase/deacetylase | 86 | 412 | 9.53E-110 | IPR011330 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 518 | 1065 | 1.73E-140 | IPR011013 |
| SUPERFAMILY | SSF88688 | Families 57/38 glycoside transferase middle domain | 415 | 512 | 2.35E-28 | IPR028995 |
| Gene3D | G3DSA:3.20.110.10 | Glycoside hydrolase 38, N terminal domain | 97 | 378 | 3.1E-121 | IPR027291 |
| Gene3D | G3DSA:2.70.98.30 | - | 657 | 921 | 1.1E-94 | - |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 379 | 457 | 1.0E-28 | IPR037094 |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 458 | 511 | 1.8E-23 | IPR037094 |
| Gene3D | G3DSA:2.60.40.1360 | - | 941 | 1068 | 1.6E-34 | - |
| Gene3D | G3DSA:2.60.40.1180 | - | 530 | 656 | 5.8E-31 | IPR013780 |
| SMART | SM00872 | Alpha_mann_mid_2 | 415 | 489 | 9.1E-24 | IPR015341 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G13980.1 | Glycosyl hydrolase family 38 protein. | 0 |
| RefSeq | XP_022018616.1 | probable alpha-mannosidase At5g13980 [Helianthus annuus] | 0 |
| Q8LPJ3 | Probable alpha-mannosidase At5g13980 OS=Arabidopsis thaliana OX=3702 GN=At5g13980 PE=2 SV=1 | 0 | |
| TrEMBL | A0A251RV71 | Alpha-mannosidase OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr16g0498931 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology