Basic Information
Locus ID:
Ftri1G19714
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Short Name:
TPL
Description:
Topless-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 2178721 | 2185900 | - | Ftri1G19714 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.79 | 124,815.80 Da | 39.55 | 80.54 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 919 | 952 | 0.0027 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 456 | 490 | 4.2E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 838 | 1096 | 6.41E-34 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 337 | 665 | 1.65E-38 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 295 | 515 | 7.2E-28 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 817 | 1097 | 6.9E-29 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 516 | 816 | 4.3E-13 | IPR015943 |
| SMART | SM00320 | WD40_4 | 343 | 382 | 65.0 | IPR001680 |
| SMART | SM00667 | Lish | 4 | 36 | 1.0E-4 | IPR006594 |
| SMART | SM00668 | ctlh | 34 | 92 | 8.4E-16 | IPR006595 |
| SMART | SM00320 | WD40_4 | 537 | 580 | 12.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 449 | 490 | 1.4E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1004 | 1045 | 4.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 583 | 623 | 7.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 493 | 534 | 0.044 | IPR001680 |
| SMART | SM00320 | WD40_4 | 913 | 952 | 1.2E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 403 | 443 | 41.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 870 | 910 | 1.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 830 | 867 | 37.0 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 10.059883 | IPR006594 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 14.198074 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 920 | 952 | 12.045688 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 456 | 499 | 10.675542 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 920 | 952 | 10.047417 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 456 | 494 | 8.544697 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 477 | 491 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1099 | 1135 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1110 | 1135 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80490.2 | TOPLESS-related 1. | 0 |
| RefSeq | XP_022016989.1 | protein TOPLESS [Helianthus annuus] | 0 |
| Q0WV90 | Topless-related protein 1 OS=Arabidopsis thaliana OX=3702 GN=TPR1 PE=1 SV=3 | 0 | |
| TrEMBL | A0A251U1M8 | Putative LIS1 homology motif protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr09g0274801 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology