Basic Information
Locus ID:
Ftri1G16177
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
RING-H2 finger protein ATL33-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 589699 | 590577 | + | Ftri1G16177 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.43 | 18,998.03 Da | 51.81 | 78.87 | 0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 62 | 105 | 5.1E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 62 | 116 | 2.94E-14 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 62 | 114 | 2.5E-14 | IPR013083 |
| SMART | SM00184 | ring_2 | 63 | 104 | 0.0031 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 63 | 105 | 11.825393 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G37580.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_023730158.1 | RING-H2 finger protein ATL79 [Lactuca sativa] | 0 |
| O80927 | RING-H2 finger protein ATL33 OS=Arabidopsis thaliana OX=3702 GN=ATL33 PE=2 SV=2 | 0 | |
| TrEMBL | A0A2J6L7H0 | RING-type E3 ubiquitin transferase OS=Lactuca sativa OX=4236 GN=LSAT_4X90701 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Asteraceae | Flaveria trinervia | 2 | Ftri18G10027, Ftri1G16177 |
| Solanaceae | Solanum chilense | 1 | SOLCI002184900 |