Basic Information
Locus ID:
Ftri1G13210
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
Ring finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 51192201 | 51194257 | - | Ftri1G13210 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.01 | 26,321.76 Da | 58.88 | 67.28 | -0.72 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 190 | 230 | 2.67378E-17 | - |
| Pfam | PF13639 | Ring finger domain | 189 | 231 | 2.7E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 189 | 234 | 3.53E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 146 | 235 | 1.1E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 190 | 230 | 4.4E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 190 | 231 | 12.002429 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 113 | 146 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 113 | 166 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G07225.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_043617050.1 | E3 ubiquitin ligase BIG BROTHER-related-like [Erigeron canadensis] | 0 |
| Q7T037 | E3 ubiquitin-protein ligase RNF12-B OS=Xenopus laevis OX=8355 GN=rnf12-b PE=2 SV=1 | 0 | |
| TrEMBL | A0A2U1PS48 | Zinc finger, RING/FYVE/PHD-type OS=Artemisia annua OX=35608 GN=CTI12_AA119650 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology