Basic Information
Locus ID:
Ftri1G13101
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 12819802 | 12821084 | + | Ftri1G13101 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.07 | 42,519.05 Da | 55.32 | 80.48 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 159 | 202 | 3.40736E-20 | - |
| Pfam | PF13639 | Ring finger domain | 159 | 202 | 9.5E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 139 | 208 | 6.56E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 135 | 207 | 1.1E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 160 | 201 | 8.9E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 160 | 202 | 12.54829 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G40250.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_043616740.1 | RING-H2 finger protein ATL46-like [Erigeron canadensis] | 0 |
| Q9FL07 | RING-H2 finger protein ATL46 OS=Arabidopsis thaliana OX=3702 GN=ATL46 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2U1N3Q0 | RING/U-box superfamily protein OS=Artemisia annua OX=35608 GN=CTI12_AA312050 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology