Basic Information
Locus ID:
Ftri1G12042
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 62739635 | 62739877 | + | Ftri1G12042 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.04 | 9,234.59 Da | 62.37 | 75.38 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 23 | 67 | 2.7E-10 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 18 | 73 | 4.64E-14 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 2 | 72 | 7.9E-15 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 24 | 67 | 10.969719 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G11370.1 | RING-H2 finger A1A. Encodes a putative RING-H2 finger protein RHA1a. | 0 |
| RefSeq | XP_024969017.1 | RING-H2 finger protein ATL18-like [Cynara cardunculus var. scolymus] | 0 |
| Q9SUS4 | Probable E3 ubiquitin-protein ligase RHA1A OS=Arabidopsis thaliana OX=3702 GN=RHA1A PE=2 SV=1 | 0 | |
| TrEMBL | A0A5N6N855 | RING-type domain-containing protein OS=Mikania micrantha OX=192012 GN=E3N88_21632 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg21858 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_21780 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah009898 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl55719, Sgl60933 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000036867, gene:ENSEOMG00000050832 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7BG0004820, CQ.Regalona.r1.9AG0019800 |
| Asteraceae | Flaveria trinervia | 7 | Ftri18G16887, Ftri18G33262, Ftri1G07426, Ftri1G12042 ... |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G38140.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10027396m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g37610.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g066530.2N |
| Plantaginaceae | Plantago ovata | 3 | Pov_00039059, Pov_00039061, Pov_00039062 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG09.344 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-4 |
| Solanaceae | Solanum chilense | 2 | SOLCI000446100, SOLCI004491000 |