Basic Information
Locus ID:
Ftri1G11776
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
zinc finger (MYND type) family protein F-box family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 3151881 | 3153890 | + | Ftri1G11776 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.85 | 42,352.99 Da | 40.28 | 78.08 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01753 | MYND finger | 300 | 339 | 1.3E-7 | IPR002893 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 298 | 345 | 3.14E-9 | - |
| SUPERFAMILY | SSF81901 | HCP-like | 78 | 196 | 1.83E-13 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 283 | 344 | 6.9E-11 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 71 | 212 | 9.5E-18 | IPR011990 |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 297 | 339 | 10.885373 | IPR002893 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G67340.1 | HCP-like superfamily protein with MYND-type zinc finger. | 0 |
| RefSeq | XP_024970838.1 | F-box protein At5g50450-like [Cynara cardunculus var. scolymus] | 0 |
| Q9FYF9 | F-box protein At1g67340 OS=Arabidopsis thaliana OX=3702 GN=At1g67340 PE=1 SV=1 | 0 | |
| TrEMBL | A0A118K3N6 | F-box domain, cyclin-like protein OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_015466 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology