Basic Information
Locus ID:
Ftri1G10187
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
ubiquitin receptor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 2472734 | 2480445 | - | Ftri1G10187 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.29 | 37,190.93 Da | 63.19 | 83.56 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF09280 | XPC-binding domain | 221 | 276 | 8.7E-23 | IPR015360 |
| Pfam | PF00627 | UBA/TS-N domain | 302 | 337 | 4.2E-11 | IPR015940 |
| Pfam | PF00627 | UBA/TS-N domain | 125 | 163 | 1.8E-12 | IPR015940 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 218 | 283 | 2.88E-22 | IPR036353 |
| SUPERFAMILY | SSF46934 | UBA-like | 121 | 172 | 1.26E-11 | IPR009060 |
| SUPERFAMILY | SSF46934 | UBA-like | 283 | 343 | 2.24E-14 | IPR009060 |
| Gene3D | G3DSA:1.10.8.10 | - | 293 | 341 | 8.5E-24 | - |
| Gene3D | G3DSA:1.10.10.540 | - | 211 | 277 | 3.6E-27 | IPR036353 |
| Gene3D | G3DSA:1.10.8.10 | - | 118 | 168 | 2.9E-17 | - |
| SMART | SM00727 | CBM | 219 | 262 | 9.9E-6 | IPR006636 |
| SMART | SM00165 | uba_6 | 125 | 165 | 0.14 | IPR015940 |
| SMART | SM00165 | uba_6 | 302 | 339 | 2.9E-8 | IPR015940 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 56 | 344 | 2.3E-85 | IPR004806 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 123 | 166 | 11.366136 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 300 | 340 | 15.197575 | IPR015940 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 296 | 312 | 1.5E-31 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 328 | 343 | 1.5E-31 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 247 | 269 | 1.5E-31 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 313 | 327 | 1.5E-31 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 76 | 106 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G79650.2 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_022015926.1 | ubiquitin receptor RAD23b [Helianthus annuus] | 0 |
| Q84L33 | Ubiquitin receptor RAD23b OS=Arabidopsis thaliana OX=3702 GN=RAD23B PE=1 SV=3 | 0 | |
| TrEMBL | A0A5N6LXE5 | Ubiquitin receptor RAD23 OS=Mikania micrantha OX=192012 GN=E3N88_39508 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology