Basic Information
Locus ID:
Ftri1G06288
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
Receptor homology region, transmembrane domain- and RING domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 6717282 | 6721422 | - | Ftri1G06288 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.95 | 48,395.37 Da | 65.35 | 78.76 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16486 | mRING-H2-C3H2C2D_ZSWM2 | 229 | 272 | 1.74648E-22 | - |
| CDD | cd02123 | PA_C_RZF_like | 9 | 159 | 2.08573E-50 | IPR044744 |
| Pfam | PF13639 | Ring finger domain | 229 | 272 | 3.6E-12 | IPR001841 |
| Pfam | PF02225 | PA domain | 57 | 138 | 1.5E-9 | IPR003137 |
| SUPERFAMILY | SSF52025 | PA domain | 73 | 131 | 1.44E-8 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 224 | 281 | 4.62E-19 | - |
| Gene3D | G3DSA:3.50.30.30 | - | 19 | 151 | 2.4E-25 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 190 | 277 | 9.7E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 230 | 271 | 3.2E-9 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 230 | 272 | 12.238477 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 412 | 445 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 412 | 436 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G71980.1 | Protease-associated (PA) RING/U-box zinc finger family protein. | 0 |
| RefSeq | XP_021992736.1 | receptor homology region, transmembrane domain- and RING domain-containing protein 2 [Helianthus annuus] | 0 |
| Q8VZ14 | Receptor homology region, transmembrane domain- and RING domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=RMR2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A251TAU4 | Putative protease-associated (PA) RING/U-box zinc finger family protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr11g0326091 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology