Basic Information
Locus ID:
Ftri1G03889
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
Regulatory protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 16055302 | 16060476 | - | Ftri1G03889 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.38 | 68,144.07 Da | 41.77 | 90.91 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18310 | BTB_POZ_NPR_plant | 64 | 210 | 2.15218E-55 | - |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 292 | 377 | 1.3E-7 | IPR020683 |
| Pfam | PF00651 | BTB/POZ domain | 80 | 159 | 2.8E-10 | IPR000210 |
| Pfam | PF11900 | Domain of unknown function (DUF3420) | 245 | 290 | 6.2E-7 | IPR024228 |
| Pfam | PF12313 | NPR1/NIM1 like defence protein C terminal | 392 | 590 | 8.2E-82 | IPR021094 |
| SUPERFAMILY | SSF54695 | POZ domain | 59 | 208 | 3.69E-15 | IPR011333 |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 289 | 394 | 4.97E-17 | IPR036770 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 55 | 240 | 1.1E-18 | IPR011333 |
| Gene3D | G3DSA:1.25.40.20 | - | 253 | 397 | 1.9E-18 | IPR036770 |
| SMART | SM00248 | ANK_2a | 316 | 346 | 180.0 | IPR002110 |
| SMART | SM00248 | ANK_2a | 350 | 382 | 4.9 | IPR002110 |
| SMART | SM00248 | ANK_2a | 287 | 315 | 1000.0 | IPR002110 |
| SMART | SM00225 | BTB_4 | 84 | 210 | 1.1E-12 | IPR000210 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 350 | 382 | 9.37738 | IPR002110 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 84 | 160 | 15.038859 | IPR000210 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 350 | 375 | 9.011944 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 582 | 607 | - | - |
| Coils | Coil | Coil | 554 | 574 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G45110.1 | NPR1-like protein 3. Encodes a paralog of NPR1. Involved in negative regulation of defense responses against bacterial and oomycete pathogens. npr3 mutants has elevated level of PR1 expression. Interacts with TGA2, TGA3, TGA5 and TGA6 in yeast two hybrid assays. | 0 |
| RefSeq | XP_024977903.1 | regulatory protein NPR3-like [Cynara cardunculus var. scolymus] | 0 |
| E7BQV0 | BTB/POZ domain and ankyrin repeat-containing protein NPR1 OS=Malus hupehensis OX=106556 GN=NPR1 PE=2 SV=2 | 0 | |
| TrEMBL | A0A103XJP8 | Ankyrin repeat-containing protein OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_005943 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg20876, jg24099, jg32913, jg37460 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_9359 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah015177 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg24590, Sbi_jg8451 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg28716 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00014746 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl41783, Sgl46585 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000011052, gene:ENSEOMG00000034168 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0014830, CQ.Regalona.r1.8BG0016030 |
| Anacardiaceae | Pistacia vera | 4 | pistato.v30013180, pistato.v30078240, pistato.v30108090 ... |
| Apiaceae | Apium graveolens | 4 | Ag10G01441, Ag6G01202, Ag7G01075, Ag9G02479 |
| Arecaceae | Cocos nucifera | 5 | COCNU_02G001470, COCNU_03G015070, COCNU_06G018980 ... |
| Arecaceae | Phoenix dactylifera | 5 | gene-LOC103702021, gene-LOC103705401, gene-LOC103719294 ... |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_01.2375.V1.1, AsparagusV1_07.3159.V1.1 |
| Asteraceae | Flaveria trinervia | 4 | Ftri13G10356, Ftri18G17771, Ftri1G03889, Ftri8G26191 |
| Brassicaceae | Arabidopsis thaliana | 4 | AT1G64280.1, AT4G19660.1, AT4G26120.1, AT5G45110.1 |
| Brassicaceae | Eutrema salsugineum | 5 | Thhalv10000824m.g.v1.0, Thhalv10023365m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 4 | Sp2g00470.v2.2, Sp2g09920.v2.2, Sp7g18230.v2.2 ... |
| Brassicaceae | Brassica nigra | 7 | BniB02g062170.2N, BniB03g012550.2N, BniB04g012090.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 3 | Ceq02G1445, Ceq02G2177, Ceq06G0842 |
| Casuarinaceae | Casuarina glauca | 3 | Cgl02G1490, Cgl02G2254, Cgl06G0867 |
| Cymodoceaceae | Cymodocea nodosa | 3 | gene.Cymno01g11640, gene.Cymno06g03730, gene.Cymno13g03260 |
| Hydrocharitaceae | Thalassia testudinum | 4 | gene.Thate02g24240, gene.Thate02g24260, gene.Thate04g03600 ... |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-4692, nbisL1-mrna-5499 |
| Nitrariaceae | Nitraria sibirica | 5 | evm.TU.LG04.2266, evm.TU.LG07.1255, evm.TU.LG12.195 ... |
| Plantaginaceae | Plantago ovata | 3 | Pov_00002953, Pov_00031763, Pov_00038621 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G14534 |
| Poaceae | Echinochloa crus-galli | 9 | AH01.1393, AH02.314, AH02.3395, BH01.1258, BH02.342 ... |
| Poaceae | Eleusine coracana subsp. coracana | 8 | gene-QOZ80_1AG0013110, gene-QOZ80_1AG0034640 ... |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.3HG0236240.1, HORVU.MOREX.r3.3HG0291620.1 ... |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_050132, gene-QYE76_055455, gene-QYE76_063196 |
| Poaceae | Oryza coarctata | 6 | Oco01G004120, Oco01G021250, Oco02G004140, Oco02G021840 ... |
| Poaceae | Oryza sativa | 3 | LOC_Os01g09800.1, LOC_Os01g56200.1, LOC_Os03g46440.1 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_01G132500, gene-BS78_03G030700 ... |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0205292, Pt_Chr0602092, Pt_Chr0602113, Pt_Chr0602542 |
| Poaceae | Sporobolus alterniflorus | 10 | Chr01G008640, Chr02G008560, Chr02G021010, Chr03G006430 ... |
| Poaceae | Thinopyrum elongatum | 7 | Tel1E01G515200, Tel3E01G183200, Tel3E01G183400 ... |
| Poaceae | Triticum dicoccoides | 7 | gene_TRIDC3AG012960, gene_TRIDC3AG044830 ... |
| Poaceae | Triticum aestivum | 11 | TraesCS3A02G105400.1, TraesCS3A02G298800.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb065420_P002, Zm00001eb121040_P001 ... |
| Poaceae | Zoysia japonica | 7 | nbis-gene-11812, nbis-gene-13337, nbis-gene-20590 ... |
| Poaceae | Zoysia macrostachya | 6 | Zma_g11226, Zma_g3112, Zma_g7805, Zma_g792, Zma_g794 ... |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG05.1529, evm.TU.LG07.1191 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc03g21400, gene.Posoc10g09380 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_4_RagTag.1823, evm.TU.Scaffold_4_RagTag.1825 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-25755 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-4245 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-4615 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000008l.1031 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00000920 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-14853, nbisL1-mrna-14854 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-1122, nbisL1-mrna-1123 |
| Salicaceae | Populus euphratica | 5 | populus_peu11921, populus_peu15006, populus_peu29049 ... |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132616465, gene-LOC132620290, gene-LOC132621418 |
| Solanaceae | Solanum chilense | 1 | SOLCI001298000 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107011476, gene-LOC107026249, gene-LOC107026404 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_6528 |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G1776 |
| Zosteraceae | Zostera marina | 2 | Zosma03g24130.v3.1, Zosma06g12380.v3.1 |