Basic Information
Locus ID:
Ftri1G02389
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 1834645 | 1844445 | + | Ftri1G02389 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.86 | 92,872.68 Da | 30.87 | 88.20 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 32 | 282 | 7.31659E-58 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 162 | 200 | 1.6E-5 | IPR001680 |
| Pfam | PF04053 | Coatomer WD associated region | 405 | 674 | 8.6E-94 | IPR006692 |
| Pfam | PF00400 | WD domain, G-beta repeat | 76 | 112 | 6.4E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 119 | 156 | 1.8E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 205 | 241 | 5.7E-8 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 333 | 429 | 1.67E-5 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 34 | 282 | 3.66E-67 | IPR036322 |
| Gene3D | G3DSA:1.25.40.470 | - | 528 | 727 | 5.9E-57 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 6 | 285 | 7.4E-98 | IPR015943 |
| SMART | SM00320 | WD40_4 | 31 | 70 | 3.7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 159 | 200 | 7.0E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 116 | 156 | 1.6E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 203 | 242 | 3.8E-11 | IPR001680 |
| SMART | SM00320 | WD40_4 | 73 | 112 | 8.5E-9 | IPR001680 |
| PIRSF | PIRSF005567 | Beta'-COP | 400 | 798 | 1.9E-107 | IPR016453 |
| PIRSF | PIRSF005567 | Beta'-COP | 18 | 407 | 8.4E-215 | IPR016453 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 210 | 251 | 14.986489 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 123 | 165 | 13.716598 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 166 | 203 | 8.755605 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 80 | 112 | 12.74747 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 123 | 157 | 11.260138 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 210 | 241 | 12.024679 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 166 | 209 | 11.544415 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 80 | 112 | 10.601049 | - |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 143 | 157 | 1.0E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 229 | 243 | 1.0E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 187 | 201 | 1.0E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 788 | 822 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 804 | 822 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G79990.1 | structural molecules. | 0 |
| RefSeq | XP_022033683.1 | coatomer subunit beta'-1 isoform X2 [Helianthus annuus] | 0 |
| Q9CAA0 | Coatomer subunit beta'-1 OS=Arabidopsis thaliana OX=3702 GN=At1g79990 PE=2 SV=2 | 0 | |
| TrEMBL | A0A5N6NBJ3 | Coatomer subunit beta' OS=Mikania micrantha OX=192012 GN=E3N88_22827 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology