Basic Information
Locus ID:
Ftri1G00637
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 60216821 | 60233090 | - | Ftri1G00637 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.48 | 64,658.23 Da | 61.53 | 60.52 | -0.67 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16623 | RING-HC_RBR_TRIAD1_like | 132 | 182 | 5.59508E-17 | - |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 271 | 315 | 7.3E-9 | IPR002867 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 201 | 263 | 4.3E-16 | IPR002867 |
| SUPERFAMILY | SSF57850 | RING/U-box | 269 | 317 | 1.3E-16 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 127 | 210 | 1.2E-18 | - |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 544 | 571 | 7.06E-6 | IPR036443 |
| SUPERFAMILY | SSF57850 | RING/U-box | 201 | 268 | 8.94E-13 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 537 | 571 | 3.0E-5 | - |
| Gene3D | G3DSA:1.20.120.1750 | - | 259 | 500 | 3.3E-74 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 126 | 216 | 3.6E-18 | IPR013083 |
| SMART | SM00547 | zf_4 | 546 | 570 | 1.4E-5 | IPR001876 |
| SMART | SM00647 | ibrneu5 | 201 | 263 | 3.5E-23 | IPR002867 |
| SMART | SM00647 | ibrneu5 | 265 | 323 | 0.23 | IPR002867 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 128 | 327 | 47.222374 | IPR044066 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 544 | 571 | 8.862888 | IPR001876 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 132 | 176 | 8.978064 | IPR001841 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 548 | 567 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 42 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 508 | 541 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 45 | - | - |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G65430.1 | IBR domain-containing protein. | 0 |
| RefSeq | XP_043615224.1 | probable E3 ubiquitin-protein ligase ARI8 [Erigeron canadensis] | 0 |
| Q8W468 | Probable E3 ubiquitin-protein ligase ARI8 OS=Arabidopsis thaliana OX=3702 GN=ARI8 PE=2 SV=1 | 0 | |
| TrEMBL | A0A251RYJ1 | RBR-type E3 ubiquitin transferase OS=Helianthus annuus OX=4232 GN=ARI8 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology