Basic Information
Locus ID:
Ftri18G26855
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr18 | 20395939 | 20401131 | + | Ftri18G26855 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.65 | 98,287.89 Da | 47.25 | 107.32 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16453 | RING-Ubox | 176 | 214 | 3.25725E-12 | - |
| Pfam | PF04564 | U-box domain | 174 | 239 | 7.4E-16 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 547 | 868 | 1.23E-34 | IPR016024 |
| SUPERFAMILY | SSF48371 | ARM repeat | 256 | 575 | 2.17E-25 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 160 | 244 | 9.71E-23 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 575 | 759 | 1.5E-24 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 150 | 244 | 1.9E-25 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 254 | 436 | 1.9E-14 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 437 | 563 | 2.1E-7 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 771 | 880 | 5.7E-10 | IPR011989 |
| SMART | SM00185 | arm_5 | 707 | 747 | 4.1 | IPR000225 |
| SMART | SM00185 | arm_5 | 441 | 481 | 12.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 782 | 822 | 18.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 824 | 866 | 31.0 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 173 | 235 | 1.9E-20 | IPR003613 |
| SMART | SM00185 | arm_5 | 661 | 704 | 100.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 482 | 525 | 490.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 400 | 440 | 480.0 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 169 | 242 | 29.723318 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G20780.1 | senescence-associated E3 ubiquitin ligase 1. Encodes a protein containing a U-box and an ARM domain. | 0 |
| RefSeq | XP_022034525.1 | U-box domain-containing protein 44 [Helianthus annuus] | 0 |
| Q9LM76 | U-box domain-containing protein 44 OS=Arabidopsis thaliana OX=3702 GN=PUB44 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5N6NAG9 | RING-type E3 ubiquitin transferase OS=Mikania micrantha OX=192012 GN=E3N88_21811 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg10276, jg29483 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30006200, pistato.v30165330 |
| Apiaceae | Apium graveolens | 1 | Ag11G03591 |
| Arecaceae | Cocos nucifera | 1 | scaffold021460G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103719070 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.421.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri18G26855, Ftri5G33561 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G1296 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G1451 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-2849 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_9_RagTag.629 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-21588 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-9626 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-7428 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000003l.191 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00017527 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-1687 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-5412 |
| Salicaceae | Populus euphratica | 6 | populus_peu27526, populus_peu27527, populus_peu27984 ... |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132632125, gene-LOC132644366, gene-LOC132645405 |
| Solanaceae | Solanum chilense | 2 | SOLCI000591400, SOLCI005051300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107008446 |