Basic Information
Locus ID:
Ftri18G26289
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
PHD finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr18 | 106773986 | 106780934 | - | Ftri18G26289 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.07 | 19,846.99 Da | 43.18 | 54.69 | -0.81 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd15613 | PHD_AL_plant | 121 | 171 | 1.59618E-30 | IPR044104 |
| Pfam | PF00628 | PHD-finger | 122 | 170 | 1.2E-10 | IPR019787 |
| Pfam | PF12165 | Alfin | 1 | 55 | 3.8E-23 | IPR021998 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 111 | 172 | 1.33E-17 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 112 | 170 | 3.1E-26 | IPR013083 |
| SMART | SM00249 | PHD_3 | 121 | 169 | 5.2E-9 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 119 | 171 | 9.401 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 122 | 168 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 60 | 113 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 60 | 79 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G20510.2 | - | 0 |
| RefSeq | XP_022013613.1 | PHD finger protein ALFIN-LIKE 4 isoform X2 [Helianthus annuus] | 0 |
| Q5XEM9 | PHD finger protein ALFIN-LIKE 5 OS=Arabidopsis thaliana OX=3702 GN=AL5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A251SDS5 | Putative alfin-like 3 OS=Helianthus annuus OX=4232 GN=AL3 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Apiaceae | Apium graveolens | 4 | Ag1G00638, Ag1G00639, Ag7G00403, Ag7G01840 |
| Arecaceae | Cocos nucifera | 1 | COCNU_11G005030 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G26289 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-5333 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC5AG067680 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-6903 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-7207 |