Basic Information
Locus ID:
Ftri18G23503
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
SNF2 family N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr18 | 79634448 | 79641034 | - | Ftri18G23503 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.39 | 111,914.39 Da | 50.17 | 82.64 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18793 | SF2_C_SNF | 898 | 993 | 2.24966E-16 | - |
| CDD | cd18008 | DEXDc_SHPRH-like | 419 | 699 | 7.22595E-96 | - |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 815 | 851 | 7.6E-8 | - |
| Pfam | PF00176 | SNF2 family N-terminal domain | 433 | 776 | 1.1E-68 | IPR000330 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 706 | 988 | 6.28E-21 | IPR027417 |
| SUPERFAMILY | SSF57850 | RING/U-box | 812 | 864 | 5.2E-11 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 399 | 699 | 6.05E-46 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 400 | 712 | 7.9E-54 | IPR038718 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 800 | 902 | 5.4E-11 | IPR013083 |
| Gene3D | G3DSA:3.40.50.300 | - | 714 | 993 | 7.5E-21 | IPR027417 |
| SMART | SM00184 | ring_2 | 815 | 853 | 2.6E-5 | IPR001841 |
| SMART | SM00487 | ultradead3 | 415 | 669 | 2.3E-21 | IPR014001 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 815 | 851 | 10.851695 | IPR001841 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 434 | 661 | 14.979425 | IPR014001 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 830 | 839 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 47 | 74 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 51 | 65 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G61140.3 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_021983193.1 | helicase-like transcription factor CHR28 [Helianthus annuus] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5N6PWM5 | Helicase ATP-binding domain-containing protein OS=Mikania micrantha OX=192012 GN=E3N88_05193 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology